Package: OmicFlow 1.6.0

OmicFlow: Fast and Efficient (Automated) Analysis of Sparse Omics Data

A generalised data structure for fast and efficient loading and data munching of sparse omics data. The 'OmicFlow' requires an up-front validated metadata template from the user, which serves as a guide to connect all the pieces together by aligning them into a single object that is defined as an 'omics' class. Once this unified structure is established, users can perform manual subsetting, visualisation, and statistical analysis, or leverage the automated 'autoFlow' method to generate a comprehensive report.

Authors:Alem Gusinac [aut, cre], Thomas Ederveen [aut], Annemarie Boleij [aut, fnd]

OmicFlow_1.6.0.tar.gz
OmicFlow_1.6.0.zip(r-4.7)OmicFlow_1.6.0.zip(r-4.6)OmicFlow_1.6.0.zip(r-4.5)
OmicFlow_1.6.0.tgz(r-4.6-x86_64)OmicFlow_1.6.0.tgz(r-4.6-arm64)OmicFlow_1.6.0.tgz(r-4.5-x86_64)OmicFlow_1.6.0.tgz(r-4.5-arm64)
OmicFlow_1.6.0.tar.gz(r-4.7-arm64)OmicFlow_1.6.0.tar.gz(r-4.7-x86_64)OmicFlow_1.6.0.tar.gz(r-4.6-arm64)OmicFlow_1.6.0.tar.gz(r-4.6-x86_64)
OmicFlow_1.5.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
OmicFlow/json (API)

# Install 'OmicFlow' in R:
install.packages('OmicFlow', repos = c('https://agusinac.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/agusinac/omicflow/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

metagenomicsomicsproteomicscpp

4.30 score 2 stars 1 scripts 353 downloads 23 exports 96 dependencies

Last updated from:07400f9adb. Checks:12 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK221
linux-devel-x86_64OK234
source / vignettesOK240
linux-release-arm64OK257
linux-release-x86_64OK248
macos-release-arm64OK189
macos-release-x86_64OK392
macos-oldrel-arm64OK120
macos-oldrel-x86_64OK226
windows-develOK212
windows-releaseOK207
windows-oldrelOK172
wasm-releaseFAIL175

Exports:braycanberracolormapcolumn_existscomposition_plotcosinediversitydiversity_ploteuclideanhill_taxajaccardjsdmanhattanmatrix_to_dtablemetagenomicsomicsordination_plotpairwise_adonispairwise_anosimplot_pairwise_statsproteomicsunifracvolcano_plot

Dependencies:abindapebackportsbiocmakebootbroomcarcarDatacliclustercolorspacecorrplotcowplotcpp11curldata.tableDerivdigestdir.expirydoBydplyrfarverfilelockforecastFormulafracdiffgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtableisobandjsonlitejsonvalidatelabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkminqamodelrnlmenloptrnnetnumDerivpatchworkpbkrtestpermutepillarpkgconfigpolynompurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelRdpackreformulasrhdf5rhdf5filtersRhdf5librlangrstatixS7scalesSparseMstringistringrsurvivaltibbletidyrtidyselecttimeDateurcautf8V8vctrsveganviridisLitewithryyjsonrzoo