Package: OmicFlow 1.7.0

OmicFlow: Fast and Efficient (Automated) Analysis of Sparse Omics Data

A generalised data structure for fast and efficient loading and data munching of sparse omics data. The 'OmicFlow' requires an up-front validated metadata template from the user, which serves as a guide to connect all the pieces together by aligning them into a single object that is defined as an 'omics' class. Once this unified structure is established, users can perform manual subsetting, visualisation, and statistical analysis, or leverage the automated 'autoFlow' method to generate a comprehensive report.

Authors:Alem Gusinac [aut, cre], Thomas Ederveen [aut], Annemarie Boleij [aut, fnd]

OmicFlow_1.7.0.tar.gz
OmicFlow_1.7.0.zip(r-4.7-x86_64)OmicFlow_1.7.0.zip(r-4.7-arm64)OmicFlow_1.7.0.zip(r-4.6-x86_64)OmicFlow_1.7.0.zip(r-4.6-arm64)OmicFlow_1.7.0.zip(r-4.5-x86_64)
OmicFlow_1.7.0.tgz(r-4.6-x86_64)OmicFlow_1.7.0.tgz(r-4.6-arm64)OmicFlow_1.7.0.tgz(r-4.5-x86_64)OmicFlow_1.7.0.tgz(r-4.5-arm64)
OmicFlow_1.7.0.tar.gz(r-4.7-arm64)OmicFlow_1.7.0.tar.gz(r-4.7-x86_64)OmicFlow_1.7.0.tar.gz(r-4.6-arm64)OmicFlow_1.7.0.tar.gz(r-4.6-x86_64)
OmicFlow_1.7.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
OmicFlow/json (API)

# Install 'OmicFlow' in R:
install.packages('OmicFlow', repos = c('https://agusinac.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/agusinac/omicflow/issues

Pkgdown/docs site:https://agusinac.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

metagenomicsomicsproteomicscpp

4.41 score 4 stars 2 scripts 629 downloads 24 exports 46 dependencies

Last updated from:04bb6943a2. Checks:15 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK215
linux-devel-x86_64OK281
source / vignettesOK238
linux-release-arm64OK195
linux-release-x86_64OK224
macos-release-arm64OK199
macos-release-x86_64OK557
macos-oldrel-arm64OK178
macos-oldrel-x86_64OK500
windows-devel-arm64OK312
windows-devel-x86_64OK277
windows-release-arm64OK281
windows-release-x86_64OK274
windows-oldrel-x86_64OK187
wasm-releaseOK146

Exports:boxjitter_testbraycanberracolormapcolumn_existscomposition_plotcosinediversitydiversity_ploteuclideanhill_taxajaccardjsdmanhattanmatrix_to_dtablemetagenomicsomicsordination_plotpairwise_adonispairwise_anosimplot_pairwise_statsproteomicsunifracvolcano_plot

Dependencies:apebiocmakecliclustercpp11curldata.tabledigestdir.expiryfarverfilelockggplot2ggrepelgluegtableisobandjsonlitejsonvalidatelabelinglatticelifecycleMASSMatrixmatrixStatsmatrixTestsmgcvnlmepatchworkpermuteR6RColorBrewerRcppRcppArmadilloRcppParallelrhdf5rhdf5filtersRhdf5librlangS7scalesV8vctrsveganviridisLitewithryyjsonr